Ammon, regarding the Perpendicular Profiles
When you make the Swept surface, use the option at the bottom of the panel, Position Profile, to realign the circle perpendiculat to the guide curve. Oncer you choose this option, click the Show Parameters button. At the very bottom, is another option to Anchor Elements On The Profile and you want to define the centerpoint of the circle as your anchor point. I think this will solve your problem.
Another way to do this is to make the profile perpendicular to begin with. Add a plane normal to a curve at the end of the centerline, and then make a sketch of the profile (or circle) in this normal plane. This way the profile also remains perpendicular to the centerline as it is swept (as long as the spine is the centerline).
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